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Browse TEfam | Search by keyword | Search by sequence pattern | Search by blast



Browse TEfam:



Select species:  
Full or partial element:  
Composite or not:  


TF accession range:   All
Range (e.g. TF000042-TF000550):




  


Search by keyword:



Select species:  
Select search field:  
Full or partial element:  
Keyword contains (e.g. retrotransposon):  



  


Search by sequence pattern:



Select species:  
Select search field:  
Sequence contains (e.g. ATGGCTATACAC):  



  


Search by blast:



Choose program to use and database to search:

Program Database

Enter sequence below in FASTA format

Or load it from disk

Set subsequence: From         To


The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect    Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Database Genetic Codes (tblast[nx] only)

Frame shift penalty for blastx

Other advanced options:     


Graphical Overview    Alignment view
Descriptions    Alignments Color schema